学习来源地址:
1,https://github.com/bdeonovic/IDPASE.jl 2, https://www.healthcare.uiowa.edu/labs/au/
- Prepare necessary input files (http://www.cnblogs.com/renping/p/7488170.html)(http://www.cnblogs.com/renping/p/7391028.html )
- VCF File
- GPD File in Extended Format. You can utilize the accompanying script to convert from regular GPD to extended GPD.
julia ~/.julia/v0.4/IDPASE/scripts/convert_gpd.jl mygpd.gpd > newgpd.gpd
- PSL alignment file of your hybrid-Seq data. You can convert from SAM/BAM to psl using libraries such as Au-public utilties in particular the sam_to_psl.py script.
- FASTQ file of your hybrid-Seq data
Annotation fileGenepred file in extended format
VCF fileList of biallelic, exonic SNPs in VCF format -------(#通过ANNOVAR对all_snp.vcf文件进行注释得到)
时间: 2024-10-29 11:38:51